Detailed information of SNP:
|
SNP ID:
sf0206102808(Gbrowse)
Chromosome: chr02 Position: 6102808 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 65.16% | 34.84% |
| All Indica | 776 | 49.48% | 50.52% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 363 | 48.76% | 51.24% |
| Indica II | 208 | 48.08% | 51.92% |
| Indica Intermediate | 205 | 52.20% | 47.80% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206102808 | C->T | INTERGENIC | None |