Detailed information of SNP:
|
SNP ID:
sf0206168898(Gbrowse)
Chromosome: chr02 Position: 6168898 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 92.87% | 7.13% |
| All Indica | 757 | 87.05% | 12.95% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 88.89% | 11.11% |
| Indica II | 203 | 88.18% | 11.82% |
| Indica Intermediate | 194 | 82.47% | 17.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206168898 | G->T | INTERGENIC | None |