Detailed information of SNP:
|
SNP ID:
sf0206177435(Gbrowse)
Chromosome: chr02 Position: 6177435 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 77.35% | 22.65% |
| All Indica | 797 | 70.14% | 29.86% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 374 | 79.41% | 20.59% |
| Indica II | 212 | 62.26% | 37.74% |
| Indica Intermediate | 211 | 61.61% | 38.39% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206177435 | G->A | INTERGENIC | None |