Detailed information of SNP:
|
SNP ID:
sf0206203920(Gbrowse)
Chromosome: chr02 Position: 6203920 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 98.92% | 1.08% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 470 | 97.02% | 2.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 316 | 99.37% | 0.63% |
| Tropical Japonica | 88 | 94.32% | 5.68% |
| Japonica Intermediate | 66 | 89.39% | 10.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206203920 | G->A | LOC_Os02g11960(LOC_Os02g11960.1) | Non-Synonymous SNP |