Detailed information of SNP:
|
SNP ID:
sf0206217169(Gbrowse)
Chromosome: chr02 Position: 6217169 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1302 | 93.63% | 6.37% |
| All Indica | 687 | 89.23% | 10.77% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 308 | 88.96% | 11.04% |
| Indica II | 194 | 90.72% | 9.28% |
| Indica Intermediate | 185 | 88.11% | 11.89% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206217169 | T->C | LOC_Os02g11990(LOC_Os02g11990.1) | INTRON |