Detailed information of SNP:
|
SNP ID:
sf0206231967(Gbrowse)
Chromosome: chr02 Position: 6231967 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1146 | 51.48% | 48.52% |
| All Indica | 530 | 90.38% | 9.62% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 203 | 98.52% | 1.48% |
| Indica II | 176 | 79.55% | 20.45% |
| Indica Intermediate | 151 | 92.05% | 7.95% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206231967 | A->G | LOC_Os02g12010(LOC_Os02g12010.1) | Non-Synonymous SNP |