Detailed information of SNP:
|
SNP ID:
sf0206232457(Gbrowse)
Chromosome: chr02 Position: 6232457 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1149 | 51.52% | 48.48% |
| All Indica | 534 | 90.07% | 9.93% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 204 | 98.04% | 1.96% |
| Indica II | 177 | 79.66% | 20.34% |
| Indica Intermediate | 153 | 91.50% | 8.50% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206232457 | T->A | INTERGENIC | None |