Detailed information of SNP:
|
SNP ID:
sf0206233846(Gbrowse)
Chromosome: chr02 Position: 6233846 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 59.65% | 40.35% |
| All Indica | 790 | 42.28% | 57.72% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 371 | 48.79% | 51.21% |
| Indica II | 209 | 34.45% | 65.55% |
| Indica Intermediate | 210 | 38.57% | 61.43% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206233846 | A->G | INTERGENIC | None |