Detailed information of SNP:
|
SNP ID:
sf0206245186(Gbrowse)
Chromosome: chr02 Position: 6245186 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 58.72% | 41.28% |
| All Indica | 797 | 40.78% | 59.22% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 373 | 47.72% | 52.28% |
| Indica II | 213 | 34.27% | 65.73% |
| Indica Intermediate | 211 | 35.07% | 64.93% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206245186 | C->T | INTERGENIC | None |