Detailed information of SNP:
|
SNP ID:
sf0206270004(Gbrowse)
Chromosome: chr02 Position: 6270004 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 55.52% | 44.48% |
| All Indica | 798 | 90.60% | 9.40% |
| All Japonica | 496 | 1.81% | 98.19% |
| Aus | 38 | 39.47% | 60.53% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206270004 | T->C | INTERGENIC | None |