Detailed information of SNP:
|
SNP ID:
sf0206274898(Gbrowse)
Chromosome: chr02 Position: 6274898 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1373 | 87.47% | 12.53% |
| All Indica | 758 | 79.55% | 20.45% |
| All Japonica | 494 | 98.38% | 1.62% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 349 | 83.38% | 16.62% |
| Indica II | 208 | 74.04% | 25.96% |
| Indica Intermediate | 201 | 78.61% | 21.39% |
| Temperate Japonica | 333 | 97.60% | 2.40% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206274898 | G->A | LOC_Os02g12100(LOC_Os02g12100.1) | Synonymous |