Detailed information of SNP:
|
SNP ID:
sf0206284604(Gbrowse)
Chromosome: chr02 Position: 6284604 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 90.88% | 9.12% |
| All Indica | 797 | 88.83% | 11.17% |
| All Japonica | 494 | 99.19% | 0.81% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 211 | 81.04% | 18.96% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 332 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206284604 | T->C | INTERGENIC | None |