Detailed information of SNP:
|
SNP ID:
sf0206300800(Gbrowse)
Chromosome: chr02 Position: 6300800 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 65.44% | 34.56% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206300800 | A->G | LOC_Os02g12120(LOC_Os02g12120.1) | Non-Synonymous SNP |