Detailed information of SNP:
|
SNP ID:
sf0206301171(Gbrowse)
Chromosome: chr02 Position: 6301171 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 62.07% | 37.93% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 494 | 4.86% | 95.14% |
| Aus | 65 | 43.08% | 56.92% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 5.11% | 94.89% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206301171 | C->T | LOC_Os02g12120(LOC_Os02g12120.1) | Synonymous |