Detailed information of SNP:
|
SNP ID:
sf0206301209(Gbrowse)
Chromosome: chr02 Position: 6301209 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1272 | 98.74% | 1.26% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 355 | 95.77% | 4.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 242 | 98.76% | 1.24% |
| Tropical Japonica | 67 | 85.07% | 14.93% |
| Japonica Intermediate | 46 | 95.65% | 4.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206301209 | G->A | LOC_Os02g12120(LOC_Os02g12120.1) | SNPs that introduce stop codons |