Detailed information of SNP:
|
SNP ID:
sf0206304433(Gbrowse)
Chromosome: chr02 Position: 6304433 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 64.92% | 35.08% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206304433 | T->C | LOC_Os02g12120(LOC_Os02g12120.1) | Synonymous |