Detailed information of SNP:
|
SNP ID:
sf0206309823(Gbrowse)
Chromosome: chr02 Position: 6309823 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 61.28% | 38.72% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 497 | 3.42% | 96.58% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206309823 | A->G | LOC_Os02g12120(LOC_Os02g12120.1) | INTRON |