Detailed information of SNP:
|
SNP ID:
sf0206334099(Gbrowse)
Chromosome: chr02 Position: 6334099 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1356 | 95.80% | 4.20% |
| All Indica | 745 | 92.89% | 7.11% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 60 | 98.33% | 1.67% |
| Indica I | 365 | 98.90% | 1.10% |
| Indica II | 180 | 83.33% | 16.67% |
| Indica Intermediate | 200 | 90.50% | 9.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206334099 | C->T | INTERGENIC | None |