Detailed information of SNP:
|
SNP ID:
sf0206348169(Gbrowse)
Chromosome: chr02 Position: 6348169 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 95.56% | 4.44% |
| All Indica | 798 | 96.62% | 3.38% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 87.74% | 12.26% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206348169 | T->C | INTERGENIC | None |