Detailed information of SNP:
|
SNP ID:
sf0206372366(Gbrowse)
Chromosome: chr02 Position: 6372366 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 50.67% | 49.33% |
| All Indica | 796 | 81.16% | 18.84% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 373 | 81.50% | 18.50% |
| Indica II | 213 | 79.34% | 20.66% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206372366 | T->C | INTERGENIC | None |