Detailed information of SNP:
|
SNP ID:
sf0206372400(Gbrowse)
Chromosome: chr02 Position: 6372400 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 54.26% | 45.74% |
| All Indica | 794 | 82.62% | 17.38% |
| All Japonica | 494 | 2.43% | 97.57% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 371 | 82.48% | 17.52% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 332 | 2.71% | 97.29% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206372400 | A->G | INTERGENIC | None |