Detailed information of SNP:
|
SNP ID:
sf0206377668(Gbrowse)
Chromosome: chr02 Position: 6377668 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 63.31% | 36.69% |
| All Indica | 798 | 98.12% | 1.88% |
| All Japonica | 490 | 3.06% | 96.94% |
| Aus | 41 | 87.80% | 12.20% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 331 | 3.32% | 96.68% |
| Tropical Japonica | 91 | 2.20% | 97.80% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206377668 | T->C | INTERGENIC | None |