Detailed information of SNP:
|
SNP ID:
sf0206385997(Gbrowse)
Chromosome: chr02 Position: 6385997 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 52.65% | 47.35% |
| All Indica | 798 | 88.60% | 11.40% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 66 | 21.21% | 78.79% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 212 | 82.08% | 17.92% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 12 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206385997 | G->A | LOC_Os02g12260(LOC_Os02g12260.1) | Non-Synonymous SNP |