Detailed information of SNP:
|
SNP ID:
sf0206387400(Gbrowse)
Chromosome: chr02 Position: 6387400 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1305 | 79.00% | 21.00% |
| All Indica | 694 | 61.53% | 38.47% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 329 | 62.61% | 37.39% |
| Indica II | 185 | 68.11% | 31.89% |
| Indica Intermediate | 180 | 52.78% | 47.22% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206387400 | A->G | INTERGENIC | None |