Detailed information of SNP:
|
SNP ID:
sf0206400695(Gbrowse)
Chromosome: chr02 Position: 6400695 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 92.39% | 7.61% |
| All Indica | 799 | 91.61% | 8.39% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 87.47% | 12.53% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206400695 | G->A | LOC_Os02g12300(LOC_Os02g12300.1) | INTRON |