Detailed information of SNP:
|
SNP ID:
sf0206476759(Gbrowse)
Chromosome: chr02 Position: 6476759 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 97.32% | 2.68% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 51.52% | 48.48% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206476759 | C->T | LOC_Os02g12420(LOC_Os02g12420.1) | UTR_3_PRIME |