Detailed information of SNP:
|
SNP ID:
sf0206487586(Gbrowse)
Chromosome: chr02 Position: 6487586 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 97.32% | 2.68% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206487586 | A->G | LOC_Os02g12440(LOC_Os02g12440.1) | Synonymous |