Detailed information of SNP:
|
SNP ID:
sf0206494550(Gbrowse)
Chromosome: chr02 Position: 6494550 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 72.36% | 27.64% |
| All Indica | 798 | 69.92% | 30.08% |
| All Japonica | 497 | 87.32% | 12.68% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 66.04% | 33.96% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206494550 | C->G | LOC_Os02g12450(LOC_Os02g12450.1) | INTRON |