Detailed information of SNP:
|
SNP ID:
sf0206495094(Gbrowse)
Chromosome: chr02 Position: 6495094 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1357 | 78.63% | 21.37% |
| All Indica | 778 | 71.21% | 28.79% |
| All Japonica | 497 | 87.93% | 12.07% |
| Aus | 29 | 82.76% | 17.24% |
| Indica I | 362 | 68.51% | 31.49% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 203 | 75.86% | 24.14% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206495094 | A->G | LOC_Os02g12450(LOC_Os02g12450.1) | Synonymous |