Detailed information of SNP:
|
SNP ID:
sf0206556033(Gbrowse)
Chromosome: chr02 Position: 6556033 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 94.64% | 5.36% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206556033 | G->A | LOC_Os02g12540(LOC_Os02g12540.1) | Non-Synonymous SNP |