Detailed information of SNP:
|
SNP ID:
sf0206646863(Gbrowse)
Chromosome: chr02 Position: 6646863 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 53.07% | 46.93% |
| All Indica | 799 | 91.49% | 8.51% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 87.20% | 12.80% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206646863 | C->T | INTERGENIC | None |