Detailed information of SNP:
|
SNP ID:
sf0206761761(Gbrowse)
Chromosome: chr02 Position: 6761761 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 53.97% | 46.03% |
| All Indica | 779 | 20.28% | 79.72% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 368 | 15.49% | 84.51% |
| Indica II | 210 | 27.14% | 72.86% |
| Indica Intermediate | 201 | 21.89% | 78.11% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206761761 | A->G | INTERGENIC | None |