Detailed information of SNP:
|
SNP ID:
sf0206770457(Gbrowse)
Chromosome: chr02 Position: 6770457 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 55.36% | 44.64% |
| All Indica | 799 | 95.37% | 4.63% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206770457 | A->T | INTERGENIC | None |