Detailed information of SNP:



SNP ID: sf0206815673(Gbrowse)

Chromosome: chr02

Position: 6815673
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 91.11% 8.89%
All Indica799 100.00% 0.00%
All Japonica495 75.76% 24.24%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica334 93.11% 6.89%
Tropical Japonica94 37.23% 62.77%
Japonica Intermediate67 43.28% 56.72%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 85.71% 14.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0206815673 C->T LOC_Os02g12910(LOC_Os02g12910.1) Non-Synonymous SNP