Detailed information of SNP:
|
SNP ID:
sf0206906369(Gbrowse)
Chromosome: chr02 Position: 6906369 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 61.82% | 38.18% |
| All Indica | 764 | 93.32% | 6.68% |
| All Japonica | 494 | 9.31% | 90.69% |
| Aus | 62 | 80.65% | 19.35% |
| Indica I | 359 | 92.48% | 7.52% |
| Indica II | 202 | 95.54% | 4.46% |
| Indica Intermediate | 203 | 92.61% | 7.39% |
| Temperate Japonica | 333 | 1.50% | 98.50% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 67 | 17.91% | 82.09% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206906369 | T->C | LOC_Os02g13040(LOC_Os02g13040.1) | Non-Synonymous SNP |