Detailed information of SNP:
|
SNP ID:
sf0207019221(Gbrowse)
Chromosome: chr02 Position: 7019221 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 53.79% | 46.21% |
| All Indica | 795 | 83.90% | 16.10% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 374 | 87.70% | 12.30% |
| Indica II | 210 | 90.95% | 9.05% |
| Indica Intermediate | 211 | 70.14% | 29.86% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207019221 | C->T | LOC_Os02g13170(LOC_Os02g13170.1) | Synonymous |