Detailed information of SNP:



SNP ID: sf0207019221(Gbrowse)

Chromosome: chr02

Position: 7019221
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1413 53.79% 46.21%
All Indica795 83.90% 16.10%
All Japonica497 1.41% 98.59%
Aus66 66.67% 33.33%
Indica I374 87.70% 12.30%
Indica II210 90.95% 9.05%
Indica Intermediate211 70.14% 29.86%
Temperate Japonica335 0.60% 99.40%
Tropical Japonica94 3.19% 96.81%
Japonica Intermediate68 2.94% 97.06%
Group VI/Aromatic14 92.86% 7.14%
Intermediate41 70.73% 29.27%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0207019221 C->T LOC_Os02g13170(LOC_Os02g13170.1) Synonymous