Detailed information of SNP:
|
SNP ID:
sf0207043918(Gbrowse)
Chromosome: chr02 Position: 7043918 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 77.94% | 22.06% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 497 | 57.14% | 42.86% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 84.27% | 15.73% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 39.70% | 60.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207043918 | A->C | INTERGENIC | None |