Detailed information of SNP:
|
SNP ID:
sf0207059780(Gbrowse)
Chromosome: chr02 Position: 7059780 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 53.49% | 46.51% |
| All Indica | 794 | 26.20% | 73.80% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 60 | 38.33% | 61.67% |
| Indica I | 374 | 27.81% | 72.19% |
| Indica II | 209 | 27.75% | 72.25% |
| Indica Intermediate | 211 | 21.80% | 78.20% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207059780 | A->T | LOC_Os02g13250(LOC_Os02g13250.1) | INTRON |