Detailed information of SNP:
|
SNP ID:
sf0207096735(Gbrowse)
Chromosome: chr02 Position: 7096735 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1347 | 76.39% | 23.61% |
| All Indica | 730 | 66.85% | 33.15% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 317 | 66.25% | 33.75% |
| Indica II | 209 | 72.73% | 27.27% |
| Indica Intermediate | 204 | 61.76% | 38.24% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207096735 | T->C | INTERGENIC | None |