Detailed information of SNP:
|
SNP ID:
sf0207103437(Gbrowse)
Chromosome: chr02 Position: 7103437 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 70.97% | 29.03% |
| All Indica | 797 | 50.56% | 49.44% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 55.73% | 44.27% |
| Indica II | 212 | 41.98% | 58.02% |
| Indica Intermediate | 210 | 50.00% | 50.00% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207103437 | T->C | INTERGENIC | None |