Detailed information of SNP:
|
SNP ID:
sf0207123792(Gbrowse)
Chromosome: chr02 Position: 7123792 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 61.45% | 38.55% |
| All Indica | 799 | 45.93% | 54.07% |
| All Japonica | 497 | 93.16% | 6.84% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 55.47% | 44.53% |
| Indica II | 213 | 27.23% | 72.77% |
| Indica Intermediate | 211 | 47.87% | 52.13% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207123792 | T->G | LOC_Os02g13350(LOC_Os02g13350.1) | Non-Synonymous SNP |