Detailed information of SNP:
|
SNP ID:
sf0207138387(Gbrowse)
Chromosome: chr02 Position: 7138387 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 50.64% | 49.36% |
| All Indica | 794 | 75.31% | 24.69% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 73.87% | 26.13% |
| Indica II | 212 | 86.79% | 13.21% |
| Indica Intermediate | 207 | 66.18% | 33.82% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207138387 | A->G | INTERGENIC | None |