Detailed information of SNP:
|
SNP ID:
sf0207138890(Gbrowse)
Chromosome: chr02 Position: 7138890 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 50.18% | 49.82% |
| All Indica | 799 | 25.91% | 74.09% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 26.93% | 73.07% |
| Indica II | 213 | 14.08% | 85.92% |
| Indica Intermediate | 211 | 36.02% | 63.98% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207138890 | A->G | INTERGENIC | None |