Detailed information of SNP:
SNP ID:
sf0207140052(Gbrowse)
Chromosome: chr02 Position: 7140052 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1419 | 88.16% | 11.84% |
All Indica | 799 | 99.75% | 0.25% |
All Japonica | 497 | 67.61% | 32.39% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 99.53% | 0.47% |
Indica Intermediate | 211 | 99.53% | 0.47% |
Temperate Japonica | 335 | 85.07% | 14.93% |
Tropical Japonica | 94 | 19.15% | 80.85% |
Japonica Intermediate | 68 | 48.53% | 51.47% |
Group VI/Aromatic | 14 | 92.86% | 7.14% |
Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0207140052 | C->T | INTERGENIC | None |