Detailed information of SNP:



SNP ID: sf0207140052(Gbrowse)

Chromosome: chr02

Position: 7140052
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 88.16% 11.84%
All Indica799 99.75% 0.25%
All Japonica497 67.61% 32.39%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 99.53% 0.47%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica335 85.07% 14.93%
Tropical Japonica94 19.15% 80.85%
Japonica Intermediate68 48.53% 51.47%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0207140052 C->T INTERGENIC None