Detailed information of SNP:
|
SNP ID:
sf0207161968(Gbrowse)
Chromosome: chr02 Position: 7161968 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 72.78% | 27.22% |
| All Indica | 797 | 98.62% | 1.38% |
| All Japonica | 488 | 25.61% | 74.39% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 331 | 10.88% | 89.12% |
| Tropical Japonica | 91 | 68.13% | 31.87% |
| Japonica Intermediate | 66 | 40.91% | 59.09% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207161968 | A->G | INTERGENIC | None |