Detailed information of SNP:
|
SNP ID:
sf0207175630(Gbrowse)
Chromosome: chr02 Position: 7175630 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 89.47% | 10.53% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 493 | 71.40% | 28.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 87.13% | 12.87% |
| Tropical Japonica | 91 | 28.57% | 71.43% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207175630 | C->T | LOC_Os02g13430(LOC_Os02g13430.1) | Synonymous |