Detailed information of SNP:
|
SNP ID:
sf0207177588(Gbrowse)
Chromosome: chr02 Position: 7177588 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 54.47% | 45.53% |
| All Indica | 799 | 82.10% | 17.90% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 211 | 68.72% | 31.28% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207177588 | A->T | LOC_Os02g13440(LOC_Os02g13440.1) | Synonymous |