Detailed information of SNP:
|
SNP ID:
sf0207179397(Gbrowse)
Chromosome: chr02 Position: 7179397 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 88.85% | 11.15% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 495 | 69.70% | 30.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 85.97% | 14.03% |
| Tropical Japonica | 93 | 25.81% | 74.19% |
| Japonica Intermediate | 67 | 49.25% | 50.75% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207179397 | A->T | LOC_Os02g13450(LOC_Os02g13450.1) | Synonymous |