Detailed information of SNP:



SNP ID: sf0207179503(Gbrowse)

Chromosome: chr02

Position: 7179503
Major allele: G

Minor allele: T

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1419 95.91% 4.09%
All Indica799 93.49% 6.51%
All Japonica497 99.60% 0.40%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 80.75% 19.25%
Indica Intermediate211 94.79% 5.21%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0207179503 G->T LOC_Os02g13450(LOC_Os02g13450.1) Non-Synonymous SNP