Detailed information of SNP:
|
SNP ID:
sf0207183259(Gbrowse)
Chromosome: chr02 Position: 7183259 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 50.92% | 49.08% |
| All Indica | 798 | 25.44% | 74.56% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 24.53% | 75.47% |
| Indica II | 212 | 16.04% | 83.96% |
| Indica Intermediate | 211 | 36.49% | 63.51% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0207183259 | T->G | INTERGENIC | None |